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Species belonging to selected taxon:
Populus trichocarpa x Populus nigra
ABOUT THIS RECORD
ID:
MNEST002227
species:
Populus trichocarpa x Populus nigra
miRNA family:
MIR172
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAATCTTGATGATGCTCCAC
miRNA*
GCAGCATCATCAAGATTCTCA
mismatches:
3
bulges:
0
View larger
pre-miRNA
CCTTTTGTGTTGTATAGTCGTTTATTGCCGAT
GCAGCATCATCAAGATTCTCA
CTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAGAGATTTAAC
TCTAACATCTCCGGCCGTGCATTTGCATG
TGAATCTTGATGATGCTCCAC
CCGCAAACAACGATTGTCAATATTTCCAT
dot-bracket secondary structure
......((((((.(((((((((..((((...(
(.(((((((((((((((((((
((.(((((....))))).)).)))..(((.......((((......)
)))....))).....(((((....)))))
.)))))))))))))))).)).
..))))..)))))))))))))))......
SIMILARITIES
miRBase
ptc-MIR172b
:
5e-66
PMRD
ptc-miRf10081-akr
:
3e-70
microPC
miR172
:
0.000002
UniProt
no hits
RFAM
mir-172: 2e-65
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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